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This site documents GECKO 4.0.0b1 (MATLAB and Python), a pre-release version. The API may still change before the stable 4.0.0 release.
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  • Guide
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  • GECKO (MATLAB) on GitHub
  • geckopy (Python) on GitHub

Section Navigation

  • MATLAB API (GECKO)
  • Python API (geckopy)
    • Build & edit ecModel (Python)
    • Databases (Python)
    • Enzyme & EC data (Python)
    • Gather kcats (Python)
    • kcat sensitivity tuning (Python)
    • Limit proteins (Python)
    • Model adapter (Python)
    • Utilities (Python)
    • Top-level (Python)
  • MATLAB vs Python
  • API reference
  • Python API (geckopy)

Python API (geckopy)#

geckopy's packages, by category.

  • Build & edit ecModel

  • Databases

  • Enzyme & EC data

  • Gather kcats

  • kcat sensitivity tuning

  • Limit proteins

  • Model adapter

  • Utilities

  • Top-level

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Utilities

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Build & edit ecModel (Python)

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